Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N17
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0927 - 22642670-22643023                                         35   0.096
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     29   3.6  
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    29   4.8  
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    29   6.3  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    28   8.3  
01_05_0285 - 20382305-20382563,20383315-20384504                       28   8.3  

>07_03_0927 - 22642670-22643023
          Length = 117

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 759 HEGAT-IPGKLVPSHGCAYVP-WGGIEHGKPQY---QILVGGPNNWVPTSGSNVPPGAFP 595
           HEG   IPG      G  YVP   G++H  P     Q L G  + WVP  G  VP    P
Sbjct: 53  HEGTVLIPGLGRFELGSTYVPDITGVDHSVPAAEHGQFLPGADDTWVPNPGFEVPNPFQP 112

Query: 594 GGET 583
           G  +
Sbjct: 113 GSSS 116


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +2

Query: 539 PSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP 718
           P + + P      S  +PP  APG    P  G Q + PP        P  IPP GT A  
Sbjct: 440 PPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQ-YAPP--------PAPIPPPGT-APS 489

Query: 719 *EGTS--LPGIVAPS 757
            +G     PG+  PS
Sbjct: 490 TDGAQNYPPGVTPPS 504


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 524 PVVRLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSI-PPH 700
           P   LPSW + PM    PSS     N  G T+ P+     + PP+   +   P  + PPH
Sbjct: 189 PGASLPSWNSSPM----PSS----ANGAGLTMPPMYWPGFYTPPSGFPHLQQPPFLRPPH 240

Query: 701 G 703
           G
Sbjct: 241 G 241


>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 575 ENLYTLVVSATKVASPPARFNSLTASA 495
           EN+ T+  SA+K+A+PPA   S  A++
Sbjct: 231 ENIDTITDSASKIATPPATITSFGAAS 257


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 633 PTSGSNVPPGA--FPGGETEDGEPLYIGRVRHEGSLTTGKVQ 514
           P  G   PPG   +PG   + G+P  +    H+G+   G  Q
Sbjct: 8   PGRGGGAPPGMTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQ 49


>01_05_0285 - 20382305-20382563,20383315-20384504
          Length = 482

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 607 WRDVGSTGRNPVVWAAY*DLVLRLSMFNTTPWNVS 711
           W +VGS     V+  AY  +VLRL +  T  W V+
Sbjct: 179 WANVGSAAAQVVMPVAYDAVVLRLGVPVTVAWRVT 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,215,614
Number of Sequences: 37544
Number of extensions: 605218
Number of successful extensions: 1716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)