Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N15
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    92   7e-20
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   3.1  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   7.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.6  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
 Frame = -1

Query: 645 PAXLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNSKRDFSFIGY 466
           P     L  FT ++  T+G  +++++  ++L+A+ +T  V  +LT +T  SK DFS +G 
Sbjct: 119 PRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGG 178

Query: 465 MXXXXXXXXXXXXXXXXXVQSAAF-EMALSIVGAIFFSMFLVYDTHQMMRVLSPEEYILA 289
                             V S  F +MA +  G + F  ++++DT+ ++   SPEE+I++
Sbjct: 179 FLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMS 238

Query: 288 TINLYLDILNLFLYILRILNELNRN 214
           ++ LYLD +NLF+ IL+IL  L  N
Sbjct: 239 SLMLYLDFINLFIRILQILGMLQNN 263


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 331 PDDEGPVPGGVHLGNHQSILGHSEP 257
           P+ E P   G+   +  S+LGHS+P
Sbjct: 423 PNFELPESNGIEFAHEDSVLGHSKP 447


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +3

Query: 186 FPKRTTKCINSCLTHSKF*VCTGIGSECPSID*WLPR--CTPP-GTGPSSSGAC 338
           F    T C  S     K   CTGI S+CP  + W     C    G G  +SG C
Sbjct: 367 FKNAGTLCRQSTNPCDKPEFCTGISSKCPVDENWDDGRICQDSLGMGSCASGVC 420


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -1

Query: 657 RRDSPAXLYLLAAFTVIQAYTIGVVVSYYNT 565
           ++D    L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 239 LSMY---RNRFRMSKYRLMVAKMYSSGDRTLIIWCVS*TRNMLKNIAPTMDRAISKAALC 409
           LS+Y   RNR+  +  +L+ A+MY+ G  T+++   S   + L N    ++R +      
Sbjct: 122 LSLYAASRNRYDTAPQKLIQARMYAQG-VTVVVLLGSVYLSTLANRLEPLEREV-----L 175

Query: 410 TTS*RRPPKMRTVKPATSMYP 472
            T    P K+   K     YP
Sbjct: 176 VTDPSNPTKLVAFKQRKERYP 196


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -3

Query: 328 DDEGPVP--GGVHLGNHQSILGHSEPIPVHTQNFE*VKQELMHLVVLLG 188
           +D+ P+    G+ + N QSI   +E + V T++F  ++   +H+ +LLG
Sbjct: 49  NDQVPIEFLAGIDI-NEQSIERATEALQVRTEDFLQLRWRPLHIELLLG 96


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 385  SHFEGGALHHQLKKTPQNENCQTSYEHVSNE*EVPFGIKRVQCERKYDGE 534
            S+F    L    KK P+N         VSNE  V  G K +Q  +K+  E
Sbjct: 1142 SYFTDSVLLSMAKKLPRNVKELKEIHGVSNEKAVNLGPKFLQVIQKFIDE 1191


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 303  EYILATINLYLDILNLFLYILRI 235
            E+++   N +LD+ N+F  I+R+
Sbjct: 1648 EFVILCFNAFLDVSNIFPAIVRV 1670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,865
Number of Sequences: 5004
Number of extensions: 56812
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)