Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N07
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    28   0.98 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   1.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.3  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   6.9  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.1  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   9.1  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 476 KSQHETRVGDSVVGQYSLLESDGTK 402
           K+  ++ VGDS+ G YS+LE+ G +
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGAE 419


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 342 VLAHDGVESRVSISSVVDSALSTVRFQERVLSY 440
           +LAH  +E  V IS++  + ++  RFQ R LS+
Sbjct: 461 ILAHGEIEVTVPISTIYVAPVNIRRFQGRDLSF 493


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 191 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERE 325
           ++ L   R     ++ E+QRL   QE+ Q+   R +R +   ++E
Sbjct: 626 QKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKE 670


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 182 PKERRRLTKLRDRNPSERHEQQRLSGLQERSQRN 283
           P   R +  L  R+P +  + +++  +QER +RN
Sbjct: 58  PAALRYIFALNSRHPEKLQKLRKMKAMQERQERN 91


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 364 NPE*ASAA*STVRLVPSDSKREYCPTTLSPTRVSCWLLTSPV 489
           NP    A  S +  +PSDS   +  T  SPT  + ++  SP+
Sbjct: 98  NPSNPHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPL 139


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 206 KLRDRNPSERHEQQRLSGLQERSQRN--EPRARRPQSGPERECVQERGPCARRR*IQSEH 379
           +LR R+PS    + R     ERS R    PR R     P+    + R P   RR  +  H
Sbjct: 112 RLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDG---RSRSPDYDRRSPKRNH 168

Query: 380 QQRS 391
           +  S
Sbjct: 169 RSPS 172


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 245 QRLSGLQERSQRNEPRARRPQSGPERECVQE 337
           + LS L ERS   +PRA     G E+E  Q+
Sbjct: 731 RELSNLNERSITIDPRAEEQAQGLEQEQGQD 761


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 491 HTGDVKSQHETRVGDSVVGQYSLLESDGTKRTVDYAADAHSGFNAVV 351
           +TG +K  HE R  D+V  +   +E +  K     +A  H  +   V
Sbjct: 82  YTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTV 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,961
Number of Sequences: 5004
Number of extensions: 21745
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)