Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_N07
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 36 0.026
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 34 0.061
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 31 0.75
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 29 1.7
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 28 5.3
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 5.3
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 28 5.3
11_06_0185 + 21018045-21022307 27 7.0
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827... 27 7.0
03_03_0192 - 15308602-15308869,15309457-15309528,15310271-153103... 27 7.0
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 9.2
09_04_0506 - 18188785-18190599 27 9.2
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 27 9.2
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 27 9.2
05_03_0233 - 10704018-10704118,10704217-10705411 27 9.2
03_06_0101 + 31653860-31654327 27 9.2
02_02_0572 + 11667455-11670783,11672026-11672419 27 9.2
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 179 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQ 307
S ERR L+ RDR+P +H + R G ERS R+ R+R P+
Sbjct: 204 SEHERRGLSHERDRSPYMQHSRSRSRGRDERS-RSRSRSRSPR 245
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 34.3 bits (75), Expect = 0.061
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 376 ASAA*STVRLVPSD-SKREYCPTTLSPTRVSCWLLTSPVWGSD 501
+S A T+ L S+ K++Y P+ T V CW LT P GSD
Sbjct: 135 SSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSD 177
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 30.7 bits (66), Expect = 0.75
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 421 KREYCPTTLSPTRVSCWLLTSPVWGSD 501
K++Y P+ + CW LT P +GSD
Sbjct: 128 KQKYLPSLTQFRTIGCWALTEPDYGSD 154
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 191 RRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARR 301
RRR + R R+PS+ E SG RS+ RN ++RR
Sbjct: 13 RRRRRRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRR 50
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 179 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 358
S +ERR + RDR+ +R +++ +ER R+ + + + ERE ++R +R
Sbjct: 88 SSRERRDRDRDRDRDEKDREKERDKD--KERRSRDREKEKEKEKEREREREKDRERRSRS 145
Query: 359 R 361
R
Sbjct: 146 R 146
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 185 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR* 364
KE+ TK D E+ ++ R N+ RR P+ CV E GP +R
Sbjct: 1774 KEKETATKKEDERDGEKKNGAQMF---TRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRF 1830
Query: 365 IQS 373
+ S
Sbjct: 1831 VYS 1833
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 517 ASXTACQTPTPATSRASTRPASVT 446
A+ AC T T AT+R++TRP T
Sbjct: 60 ATAVACTTTTTATTRSATRPRKRT 83
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 185 KERRRLTKLRDRNPSERHEQQRLSGLQERSQ-RNEPRARRPQSGPERE 325
+ERR + K +R ++ EQ++ +E+++ R E R+ Q E E
Sbjct: 461 EERRDMEKGEERKEQQQEEQEKEGRKEEQNEVRKETEGRKEQVAGEEE 508
>08_02_0377 +
16481232-16481361,16482501-16482547,16482634-16482711,
16482826-16482896,16483005-16483086
Length = 135
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 482 DVKSQHETRVGDSVVGQYSLLESDGTKRTV--DYAADAHSGFNAV--VRKDPALVHTPVL 315
D++ +SV+ L+S+ + DY +G++ + V+K P LVH PV+
Sbjct: 37 DIEENTRVTAVESVMQALVFLDSEHDVNMIVSDYCMPEMTGYDLLMEVKKSPRLVHLPVI 96
Query: 314 AHSA 303
S+
Sbjct: 97 IASS 100
>03_03_0192 -
15308602-15308869,15309457-15309528,15310271-15310337,
15310449-15310528,15310636-15310714,15310815-15310890
Length = 213
Score = 27.5 bits (58), Expect = 7.0
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 179 SPKERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARR 358
SPK R R RDR + + + ++ Q E R R ERE QE+G R
Sbjct: 121 SPKRRYR-ADYRDRGYRDDYRDRHY---RDDYQDREYRRSRSIERYERERYQEKGYRRRS 176
Query: 359 R*IQSEHQQRSRQ 397
R I ++ +R R+
Sbjct: 177 RSISPDYDRRHRK 189
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +2
Query: 185 KERRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR 361
+ER R + RD+N +Q+R + +R R R SG + P AR R
Sbjct: 791 RERER-ERDRDQNRDRDRDQERDRDRERDRERESRREARESSGANNDSTTSMRPKARSR 848
>09_04_0506 - 18188785-18190599
Length = 604
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 224 PSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQER 340
P RH +R +G + +R+ R R ERE ++R
Sbjct: 509 PERRHRDERDAGRERERERDRDRERERDRDRERERERDR 547
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 290 RARRPQSGPERECVQERGPCARRR*IQSEHQQRSRQCA*YRQIPRES 430
R R+ EC Q C RR E +Q+ R+C+ R+I E+
Sbjct: 529 RWRKKLKCASEECSQVMNRCKRRAMEDDEMEQQIRRCSFPRRIAHET 575
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = +2
Query: 182 PKERRRLTKLRDRNPSERHEQQRLSGLQERS--QRNEPRARRP----QSGPERECVQERG 343
P+ R R R R+P R + S +ERS +RN R P P+R+ V+E+
Sbjct: 30 PRRRERSPAARSRSPRRRSPVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQV 89
Query: 344 PCARRR*IQSEHQQRSRQ 397
++ +S R R+
Sbjct: 90 RSPKQSWSRSPSPARKRE 107
>05_03_0233 - 10704018-10704118,10704217-10705411
Length = 431
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 396 CRLRC*CSLWIQR 358
C+LRC C LW++R
Sbjct: 40 CQLRCVCKLWLER 52
>03_06_0101 + 31653860-31654327
Length = 155
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +2
Query: 233 RHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGPCARRR*IQSEHQQRSRQC 400
R QR + QER R R++ SG + E PC H RS+ C
Sbjct: 81 RAASQRRAAEQEREARAVARSQSMASGISMARIDEDAPCEEFGDAGVMHYPRSQSC 136
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 258 GYRRDHSGMSQGRDDRRVGQNG--SVYKSGVLAHDGVESR 371
G RRD G +GRDDR G Y+ G HD R
Sbjct: 148 GRRRDERGRDRGRDDRGRDDGGRDRDYERGGRDHDRSHGR 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,012
Number of Sequences: 37544
Number of extensions: 167235
Number of successful extensions: 726
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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