Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N07
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.089
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   0.83 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   2.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   3.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.089
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = +2

Query: 206  KLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECVQERGP 346
            K + + P ++ +QQ+    Q++SQ  +P+ ++PQ   +++  Q++ P
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQ--QPQQQQPQPQQQQQQQQQQQP 1543



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 263 QERSQRNEPRARRPQSGPERECVQERGP 346
           Q++ Q+ +P+ ++ Q   +++  Q+RGP
Sbjct: 833 QQQQQQQQPQQQQQQQQQQQQ--QQRGP 858


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 312 PLCGRRALGSFRCDLSCSPLSRCCS 238
           P CG   +  F CD+S S LS  C+
Sbjct: 47  PFCGPNVINPFFCDMSPS-LSLLCA 70


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 191 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECV 331
           R+R ++ R+R  +    ++     +ERS+      R  +   ER+ +
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKII 82


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 191 RRRLTKLRDRNPSERHEQQRLSGLQERSQRNEPRARRPQSGPERECV 331
           R+R ++ R+R  +    ++     +ERS+      R  +   ER+ +
Sbjct: 36  RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKRERERSKERKII 82


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 312 PLCGRRALGSFRCDLS 265
           P CG   +  F CD+S
Sbjct: 46  PFCGPNVINPFFCDMS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,443
Number of Sequences: 438
Number of extensions: 1743
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)