Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N05
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    25   4.5  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   4.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   5.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   7.8  

>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 425 WNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEKGEKGIKERSEL 288
           W +Q   +  +YL  KH  K  D S    E+  E  EK +    +L
Sbjct: 99  WEYQKSRNDNLYLLEKHGEKAFDSSLEALEVQLELLEKELVNTKKL 144


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 473 CESLLEEXEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDD 354
           C + L    + V ++ + H G  D  IY  TKH     DD
Sbjct: 334 CSTPLFRLWVGVSEYVFRHPGLLDSCIYTATKHNDFSPDD 373


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 347 LYEELNN-EKGEKGIKERSEL*DLLTQICT 261
           LY EL+  E+ E  +KE   + D+  Q+CT
Sbjct: 314 LYNELDEQEELESNVKEEGTMVDVWMQLCT 343


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 428 YWNHQGKEDLKIYLCTKHALKGVDD 354
           YW  Q   + K+ LCT+  L  +D+
Sbjct: 398 YWRKQQSCEAKLLLCTRSLLAHLDE 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,666
Number of Sequences: 5004
Number of extensions: 28482
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)