Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N05
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222...    28   4.5  
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    28   4.5  

>02_05_1293 -
           35520733-35520963,35521696-35521878,35522040-35522255,
           35522936-35523022,35523125-35523331,35523426-35523650,
           35523743-35523798,35524009-35524115,35524443-35525470
          Length = 779

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 364 PFKACFVHKYILRSSLP*WFQYQSSTAISXSSKRLSHC 477
           P  A F  +   +++ P W+Q+ SS+AI   +K  S C
Sbjct: 136 PRLAAFNPRRDFQTAAPWWWQWSSSSAIPSRTKEASFC 173


>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 464 LLEEXEIAVEDWYWNHQGKEDLKIYLCTKHALKGVDDSCLYEELNNEKGEKGIKERS 294
           +L E   A E++  NH G E +++++    +   +DD+        E  EK I ER+
Sbjct: 127 VLTENPHATENFQTNHHGSEWVELFVREMMSASDIDDARARASRALEALEKSIMERA 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,459,297
Number of Sequences: 37544
Number of extensions: 133234
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)