Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N02
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   7.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.3  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    24   9.6  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 168 FVYFGHYFTPSEP*VHLIFYTVKC-TSGKLKH 260
           F+Y  +      P  + +FYT KC ++ KL H
Sbjct: 9   FIYLNNTLLSEVPEPNSVFYTPKCFSNSKLPH 40


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 307 IEVQAELLAII*TMIWCFNLPDVHLTV 227
           I+V AE+L  + T+  C  +PD+ LTV
Sbjct: 521 IQVVAEVLEKLLTVGICDTVPDIRLTV 547


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 115 GMGLKFYI**RV*YLLSCLCILVTISHQVSRKFI*FSTLLNVH 243
           G GL + I   +   + C C+  T  H++++     +T+ N+H
Sbjct: 811 GFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEEITTVKNLH 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,627
Number of Sequences: 5004
Number of extensions: 31212
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)