Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N02
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   2.8  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   2.8  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   2.8  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   2.8  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   2.8  
Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical pr...    28   3.7  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 99   IKLSFWNGIKILYLITSLVFVIMFVY 176
            + L F+ G K + L+T L+ V+MF++
Sbjct: 991  VVLEFFRGFKEILLVTILMIVVMFIF 1016


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 99   IKLSFWNGIKILYLITSLVFVIMFVY 176
            + L F+ G K + L+T L+ V+MF++
Sbjct: 1025 VVLEFFRGFKEILLVTILMIVVMFIF 1050


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 99   IKLSFWNGIKILYLITSLVFVIMFVY 176
            + L F+ G K + L+T L+ V+MF++
Sbjct: 1083 VVLEFFRGFKEILLVTILMIVVMFIF 1108


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 99   IKLSFWNGIKILYLITSLVFVIMFVY 176
            + L F+ G K + L+T L+ V+MF++
Sbjct: 1136 VVLEFFRGFKEILLVTILMIVVMFIF 1161


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 99   IKLSFWNGIKILYLITSLVFVIMFVY 176
            + L F+ G K + L+T L+ V+MF++
Sbjct: 1055 VVLEFFRGFKEILLVTILMIVVMFIF 1080


>Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical
           protein K08D8.3 protein.
          Length = 479

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 272 LNDGQQLSLNLYHSRCLGPSVTI 340
           L+ GQQ+SL +Y+S+ L P+ T+
Sbjct: 414 LSKGQQVSLTVYNSKNLPPATTV 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,072,346
Number of Sequences: 27780
Number of extensions: 167215
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)