Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M24
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601...    27   5.6  
03_02_0150 + 5941560-5941739,5942027-5942118,5942232-5942298,594...    27   5.6  
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991...    27   7.3  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    27   7.3  
06_03_1237 + 28602250-28604196                                         27   7.3  
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833...    27   7.3  

>06_03_1037 -
           27058002-27058082,27058856-27059041,27060033-27060176,
           27060284-27061183
          Length = 436

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 83  KGGRGRQSKRRESWRIRNRKDGRRG 157
           +GGRGR ++ RE  R R R DG RG
Sbjct: 213 RGGRGRGARGRERGRGRGR-DGGRG 236


>03_02_0150 +
           5941560-5941739,5942027-5942118,5942232-5942298,
           5942401-5942523,5942692-5942784,5943149-5943278,
           5943483-5943564,5943682-5943814,5944246-5944451,
           5944538-5944663,5945024-5945333,5945518-5945643,
           5946151-5946456
          Length = 657

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 208 TTLCTPPAYTVGW 246
           +T+C PPA TVGW
Sbjct: 225 STMCGPPARTVGW 237


>12_01_0979 -
           9914779-9915327,9915409-9915536,9915947-9916050,
           9919832-9919946,9921036-9921528
          Length = 462

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 251 ASHPTVYAGGVHSVVIPSLYGRTYAAPTVV 162
           A+ PT  A GV SVV PS  G   AAP +V
Sbjct: 45  AAPPTRRAPGVCSVVSPSKPGSLSAAPLLV 74


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 71  ITSMKGGR--GRQSKRRESWRIRNRKDGRR 154
           + S++GGR  GR+ +RR   R + R++G R
Sbjct: 454 LVSLRGGRRRGRRRRRRRRQRQQRRQEGNR 483


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 201 FFVWSHIRRPHGSCYPRLP 145
           F V+SH+RR HG+  P LP
Sbjct: 123 FRVFSHLRRAHGAELPFLP 141


>01_01_1054 +
           8330081-8330137,8330229-8330321,8330445-8330504,
           8330703-8330975,8331107-8331181,8331269-8331325,
           8331409-8331549,8331656-8331706,8331795-8331944,
           8331974-8332057,8332171-8332273,8332451-8332527,
           8333469-8333704,8334000-8334078,8335123-8335218,
           8335735-8335828,8336325-8336423,8336663-8337453
          Length = 871

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 107 KRRESWRIRNRKDGRRG*QLPWGRRMCDHTKKE 205
           +RRE+     +  G RG ++P G+  CD+ +K+
Sbjct: 430 ERREAAEGGKKGGGGRGSEMPLGKYYCDYCEKQ 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,322,599
Number of Sequences: 37544
Number of extensions: 143290
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)