Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_M23
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 43 3e-04
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 42 6e-04
03_02_0810 + 11429776-11429985,11430003-11430935 34 0.12
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 33 0.16
05_05_0168 + 22875488-22876072 29 3.5
11_06_0121 - 20330511-20330707,20332250-20332343 29 4.6
03_02_0811 + 11437654-11438958 28 6.1
03_02_0809 + 11419318-11420493 28 6.1
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = -2
Query: 683 VSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 573
VSGFPT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 220 VSGFPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 255
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 683 VSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 555
VSG+PTI W PK S +P++Y G R E +YV+ +A + +K
Sbjct: 101 VSGYPTIQWFPK-GSLEPKKYEGQRTAEALAEYVNSEAATNVK 142
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/37 (45%), Positives = 29/37 (78%)
Frame = -2
Query: 683 VSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQ 573
VSG+PT+ + PK +K + Y+GGR L+DF+K+++E+
Sbjct: 191 VSGYPTLKFFPK-GNKAGEDYDGGRELDDFVKFINEK 226
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = -2
Query: 683 VSGFPTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELK 555
VSG+PTI W PK S +P++Y G R+ E ++V+ + + +K
Sbjct: 72 VSGYPTIQWFPK-GSLEPKKYEGQRSAEALAEFVNTEGGTNVK 113
>03_02_0810 + 11429776-11429985,11430003-11430935
Length = 380
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 453 TQIHTQIFHGKF*ITTARLQLFLSLFGVTLSVPALKFACGLFRN 584
T ++T ++ K +TT +++ FG SVP + F CGLF N
Sbjct: 111 TCVYTYYYNDKS-VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 671 PTIFWKPKDSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKEE 513
P + + P++ K + NG ++ + SE+A+S L + KG+ QGKEE
Sbjct: 313 PALLYLPRNG--KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361
>05_05_0168 + 22875488-22876072
Length = 194
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 683 VSGFPTIFWKPKDSSKKPQRYNGGRALED 597
+ G P ++P+DSS P GG ++D
Sbjct: 93 IGGLPVTLYRPRDSSSPPAGKGGGGGVDD 121
>11_06_0121 - 20330511-20330707,20332250-20332343
Length = 96
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 442 IHPSHKYTRR-SFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 618
+H ++TRR F+++ A +S +ALP+ + L++ + S T R++PP
Sbjct: 10 LHLFGQHTRRMEFIDNEMPSGTAMPTSVEGVALPWPHESLTTPIDTSNTASSLEPRSKPP 69
Query: 619 LYL*GFL-ELSLGFQKIVGKPETS 687
Y G L + +G VG +S
Sbjct: 70 NYAMGVLNDGCIGVHDSVGVASSS 93
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 453 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 584
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 160 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 203
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 453 TQIHTQIFHGKF*ITTARLQLFLSLF-GVTLSVPALKFACGLFRN 584
T ++T + K +TT L++ F G SVP + F CGLF N
Sbjct: 113 TCVYTYSYGDKS-VTTGFLEVDKFTFVGAGASVPGVAFGCGLFNN 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,018
Number of Sequences: 37544
Number of extensions: 357892
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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