Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M21
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    31   0.54 

>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 414 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 572
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 291 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 342


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 414 LTNHNSETILFSTKSKFVIKN*LPYFNCFP*QYLNKDGIFSLIRKKQQYPIQK 572
           +TNH S+  +F   S       L  F CF   Y N+D + S +R+ Q   IQK
Sbjct: 300 ITNHASQFYVFCACSTDYRTTFLQKFPCFKTDYANRDRLRSFVRRTQSV-IQK 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,482
Number of Sequences: 27780
Number of extensions: 270959
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)