Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_M16
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 211 9e-56
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.40
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.8
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 8.7
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 8.7
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 8.7
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 8.7
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 8.7
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 8.7
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 8.7
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 8.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 211 bits (515), Expect = 9e-56
Identities = 109/228 (47%), Positives = 135/228 (59%)
Frame = -1
Query: 747 VFTRGDLXEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 568
VFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI+
Sbjct: 87 VFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKIT 146
Query: 567 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 388
+GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+
Sbjct: 147 RGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSE 206
Query: 387 EDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEF 208
EDL + + + A+SL YPTI S HS+ N +KNL+ K F
Sbjct: 207 EDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAF 266
Query: 207 IKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 64
+ DPS F SD+DMGFGLFD
Sbjct: 267 LADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 202 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 381
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 382 ILWFDVQNF 408
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 548 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 673
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 199 VLNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGT 378
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 379 EI 384
E+
Sbjct: 1076 EL 1077
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 541 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 663
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 661 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 527
P+ ++P H+PW E+ G F G +H+ H E
Sbjct: 183 PVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -3
Query: 661 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 527
PI ++P H+PW E+ G F G +H+ H E
Sbjct: 295 PIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEE 339
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 541 IVDDFNSTL*NLGRDRKSL 597
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 93 DDDMGFGLFD 64
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,132
Number of Sequences: 5004
Number of extensions: 55785
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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