Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M13
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 429 IKRRTQPQVSKRVHVCDIITMR*LTRHIL 343
           I   TQP  S ++HV D+ T   L + ++
Sbjct: 146 IINNTQPMCSPKLHVFDLNTSHQLKQVVM 174


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 226 SKQKTHSLVRRTRCTYPT*TMQSANNFR 309
           SK+++     R RC  P      +NN++
Sbjct: 63  SKERSRDRTERERCKEPKIISSLSNNYK 90


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 314 FLRKLFALCIVYVGYVHLV 258
           FL+KL A+ I   G VHLV
Sbjct: 172 FLKKLGAVDIAGSGAVHLV 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,268
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)