Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M11
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    28   1.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.2  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    25   9.0  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   9.0  
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 403 QYYLDGNNVPYLPYSQYMNSKMY 335
           +Y L+ N +PYLP ++  N K+Y
Sbjct: 264 EYPLNANALPYLPQTEEKNDKLY 286


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 627  FCICLIMHYVLSIFYLCCY 571
            F ICLI++  L I YL CY
Sbjct: 1343 FWICLILNVALCIMYLRCY 1361


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 520 CWPFASSLFSAFDVCF 473
           CWPF +      D+CF
Sbjct: 153 CWPFITIAVQVLDICF 168


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 279 HVIIIFLLPLSLNKFRMFTNPKRYILLSKNCCFT 178
           HV +  LLPL +    +     RY+++  N C++
Sbjct: 115 HVCLSILLPLIIMAMMVPLESNRYVVICMNGCYS 148


>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 391 DGNNVPYLPYSQYMNSKMYILFQV 320
           D +++PY PYSQ+    + + F +
Sbjct: 22  DASDIPYDPYSQFWGKVLVLTFGI 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,280
Number of Sequences: 5004
Number of extensions: 41215
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)