Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M07
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    51   2e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    34   0.019
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    33   0.033
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   1.6  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/38 (55%), Positives = 30/38 (78%)
 Frame = -1

Query: 609 KGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 496
           KGT+Y +FT  N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 466 KGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -1

Query: 609 KGTSYAFFTPSNSRQAKDLVSVLQEANQMI 520
           KGT+  FFTP +   A +LV+VL++A Q I
Sbjct: 513 KGTAITFFTPQDKSHAGELVNVLRQAKQDI 542


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 496
           G + AFF  +N   AK+L+ +LQEANQ     L +MA
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 286 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 399
           H+IY+    S    C +  YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,338
Number of Sequences: 5004
Number of extensions: 39322
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)