Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_M07
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 46 3e-05
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 43 2e-04
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 43 2e-04
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 42 3e-04
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 38 0.006
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 32 0.31
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 32 0.41
08_01_0397 - 3509186-3510291,3510322-3512335 31 0.71
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 29 3.8
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/37 (48%), Positives = 31/37 (83%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMA 496
GT++ FFT SN++ +++LV +L+EA Q+++P L+SMA
Sbjct: 516 GTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMA 552
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G SY FF+ + + A DLV VL+ ANQ + P+LQ MA R
Sbjct: 946 GVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 984
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = -1
Query: 609 KGTSYAFFTPSNSRQAKDLVSVLQEANQ 526
KGT+Y FFT +N+R AKDL+++L+EA Q
Sbjct: 407 KGTAYTFFTAANARFAKDLINILEEAGQ 434
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G +Y FF +S+ A DLV +L+ ANQ +S QL+ M R
Sbjct: 522 GVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSR 560
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G +Y FF +S+ A DL+ +L+ ANQ + L MA R
Sbjct: 492 GVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASR 530
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G + AFF +NS A+ L ++QE+NQ + L A R
Sbjct: 514 GLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAAR 552
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G + AFF SN+ A+ L ++QEANQ + L+ A R
Sbjct: 689 GLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAAR 727
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 609 KGTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
KG + F + R A DLV L+ + Q + L+ +ADR
Sbjct: 758 KGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKGLADR 797
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 606 GTSYAFFTPSNSRQAKDLVSVLQEANQMISPQLQSMADR 490
G + AFF N A+ L ++QEANQ + L+ + R
Sbjct: 594 GLATAFFNEGNLSLARPLCELMQEANQEVPQWLERYSAR 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,655
Number of Sequences: 37544
Number of extensions: 240421
Number of successful extensions: 444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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