Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_M03
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    71   1e-13
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    30   0.40 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.8  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   3.7  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   6.4  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 31/57 (54%), Positives = 44/57 (77%)
 Frame = -1

Query: 738 SIPVTITLQEASGKXVLLLPMGAGDDMAHSQNEKINVRNYIEGIKLFAAYLFEVGKL 568
           SIPVT+T +++  K VLLLPMG GDD AHS NEK+++ N+++GIKLF  Y+ E+  +
Sbjct: 416 SIPVTVTFEQSLKKNVLLLPMGRGDDGAHSINEKLDLDNFLKGIKLFCTYVHELASV 472


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 424 GSLFISIYPSPGYERFHKI--KSFGKITKTIKTIS 522
           G ++   YP P YE+  +I   ++GK+ K I T++
Sbjct: 265 GPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVT 299


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 376 HDLTVLFPKRGYKIDCGS 429
           HDL  LF KR ++ DCG+
Sbjct: 74  HDLVDLFNKRHFRCDCGT 91


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 463 ERFHKIKSFGKITKTIKTIS 522
           +R   IK+  KITKTIKT++
Sbjct: 39  QRLKSIKNIEKITKTIKTVA 58


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 4   TFKKRTKIHVCTTLLYYDDYKIQE-K*LCNMSIHNKINTKLYETFKKKCLP 153
           T K+R   H    +++ +D+++QE   L  +++       + E  K++CLP
Sbjct: 349 TEKRRCAKHTSWQVIFTEDFELQESNILQKLNMKQTAKDVMLEHQKQRCLP 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,903
Number of Sequences: 5004
Number of extensions: 53499
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)