Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L24
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0123 + 18210069-18213737                                         31   0.98 
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049...    28   6.9  

>05_04_0123 + 18210069-18213737
          Length = 1222

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 198  AQFSSKSFSDSY*PHNFSQLEVEFCY 121
            AQ S KSF D    HN  ++E+EFCY
Sbjct: 1056 AQVSVKSFEDEG-MHNLERIEIEFCY 1080


>03_02_0880 -
           12103703-12103726,12103938-12104210,12104389-12104931,
           12105017-12105374,12105696-12105994,12106116-12106189,
           12106630-12106717,12107573-12107674,12107813-12107841,
           12108118-12108235
          Length = 635

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +3

Query: 156 VVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNIFKHYYSTKHWCSLSIKNMYSFSFPIKI 335
           +++KN+    + I    SNS + +  + H     +++Y+ KHW     +N Y  S     
Sbjct: 336 ILSKNVLAASVVINSTVSNSEETENVVFHILTDAQNFYAMKHWFG---RNSYRES--AVH 390

Query: 336 LVNYKNLIIPN 368
           ++NY+++I+ N
Sbjct: 391 VINYEHIILEN 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,826
Number of Sequences: 37544
Number of extensions: 211007
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)