Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L24
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    31   1.2  
AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    29   4.7  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 6   NIQDFYNKQSYSKVIRAFFTLQLRTNNYCSEKKKNS 113
           NI   Y+    S ++R F  +  ++NN+CSE + NS
Sbjct: 654 NINLSYSNIVASNILRTFTFINSKSNNFCSENRINS 689


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 6   NIQDFYNKQSYSKVIRAFFTLQLRTNNYCSEKKKNS 113
           NI   Y+    S ++R F  +  ++NN+CSE + NS
Sbjct: 654 NINLSYSNIVASNILRTFTFINSKSNNFCSENRINS 689


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 6   NIQDFYNKQSYSKVIRAFFTLQLRTNNYCSEKKKNS 113
           NI   Y+    S ++R F  +  ++NN+CSE + NS
Sbjct: 700 NINLSYSNIVASNILRTFTFINSKSNNFCSENRINS 735


>AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical
           protein F22E5.7 protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 150 SCVVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNIFKHYYS 272
           S + +K L ++ +  +L FSNS+K    +N +C     +YS
Sbjct: 3   SSISSKLLLLLLLTFLLTFSNSTKFTALVNLRCRSHAVWYS 43


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 242 QMQYL*TLLFYKTLVFTFN*KHVFIFISNKNTSK 343
           QM Y    L    L+FT    H+FI  +NKN +K
Sbjct: 464 QMNYSAPFLLVLFLMFTIKKSHIFINYNNKNRTK 497


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 189 KIVLQFSNSSKLKVRINHKCNIFKHY---YSTKHWCSLSIKNMYSFSFPIKILVNYKNLI 359
           KIV    ++S +  ++NH CNI   Y    +T H C+++ KN+   +   K L    N  
Sbjct: 201 KIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMT-KNVLPTTSSQKSLELRNNST 259

Query: 360 IPN 368
           + N
Sbjct: 260 VQN 262


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 189 KIVLQFSNSSKLKVRINHKCNIFKHY---YSTKHWCSLSIKNMYSFSFPIKILVNYKNLI 359
           KIV    ++S +  ++NH CNI   Y    +T H C+++ KN+   +   K L    N  
Sbjct: 201 KIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMT-KNVLPTTSSQKSLELRNNST 259

Query: 360 IPN 368
           + N
Sbjct: 260 VQN 262


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 141 IERSCVV-NKNLKMIWMKIVLQFSNSSKLKV-RINHKCNIFKHYY 269
           +E  CVV N + K +  K+    SN S  K  +   KC+  +H+Y
Sbjct: 522 LEEECVVPNGSEKSLLEKLCSNLSNDSSFKKSKQTQKCSTIRHFY 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,227
Number of Sequences: 27780
Number of extensions: 255530
Number of successful extensions: 562
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)