Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L24
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +3

Query: 207 SNSSKLKVRINHKCNIFKHYYSTKHWCSLSIKNMYSFSFPIKILV 341
           S   K+   +++ CN   +YY+  ++  L     Y    PI + V
Sbjct: 298 SKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPV 342


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 371 TKHNLRNIKLDPLLQFTFFIHKSMFDA 451
           TK+NL  ++  P+L   F  H S+  A
Sbjct: 521 TKNNLMKLETTPVLPSRFQSHPSIDSA 547


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 229 TFNLDEFENCSTIFIQIIFRFLLTTQLLSIGS*VLLFKPEFFFFS 95
           T+++D +   S +  ++ F+    T  LSI     ++KP+ +F++
Sbjct: 50  TYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,511
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)