Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L23
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    42   6e-05
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    40   3e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    34   0.017
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    32   0.069
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    32   0.091
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   7.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.9  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = -3

Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
           DE   IAS   + +MPTFVF +NGK++D  +GAN
Sbjct: 61  DEQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -3

Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
           D+  +IA+E  +++MP+F   KNG+K++E  GAN
Sbjct: 58  DQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 688 DIASEYNINSMPTFVFXKNGKKLDEFSG 605
           D+ SEY+I   PT    KNGK++ ++SG
Sbjct: 85  DLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGANV 596
           D+  DIA +  + ++PT V  + G++LD   GA+V
Sbjct: 75  DKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
           ++  DIA  +++N++P FV     K L   SGAN
Sbjct: 60  EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 433 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 540
           N   ++TD +NIF +F+ N   + F    L  I  C
Sbjct: 76  NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 488 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 396
           + +N +K+  +S+  L  LIF VC  LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 503 KNMYTFLINEEKMFLTSVMNLK 438
           +N Y +L+NE+  FLTS+  +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,926
Number of Sequences: 5004
Number of extensions: 52992
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)