Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_L23
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 49 3e-06
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 42 3e-04
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 42 3e-04
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 42 3e-04
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 42 4e-04
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 40 0.001
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 38 0.007
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 36 0.028
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 36 0.028
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 36 0.028
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 33 0.15
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 29 3.2
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 29 3.2
Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical pr... 29 4.3
U97402-2|AAB63409.2| 393|Caenorhabditis elegans Hypothetical pr... 28 5.6
U97402-1|ABB51193.1| 393|Caenorhabditis elegans Hypothetical pr... 28 5.6
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
DEC+ + EY INSMPTF+ +G K D+FSGAN
Sbjct: 61 DECDGVGEEYEINSMPTFLLIVDGIKKDQFSGAN 94
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGANVD 593
DE ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 67 DEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGANVD 593
DE ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 66 DEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGANVD 593
DE ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 66 DEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGANVD 593
DE ED+ S+Y++ MPTF+F KNG ++ G D
Sbjct: 67 DEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
D DI YNI++MPTF+F KN +++D GAN
Sbjct: 62 DVARDIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
D DI YNI++MPTF+F KN +++D GAN
Sbjct: 62 DVARDIVQRYNISAMPTFIFLKNRQQVDMVRGAN 95
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3
Query: 688 DIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
DI YNI++MPTF+F KN +++D GAN
Sbjct: 2 DIVQRYNISAMPTFIFLKNRQQVDMVRGAN 31
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
DEC A+ Y +N+MPTF+ NG+K GA+
Sbjct: 61 DECRGTAATYGVNAMPTFIAFVNGQKKATIQGAD 94
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -3
Query: 694 CEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -3
Query: 694 CEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -3
Query: 694 CEDIASEYNINSMPTFVFXKNGKKLDEFSGAN 599
CE +SE +NSMPTF+ ++G ++++ GA+
Sbjct: 63 CEKTSSENGVNSMPTFMVFQSGVRVEQMKGAD 94
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGKKLDEFSG 605
D ++A +Y I+++PT KNG+K+ FSG
Sbjct: 71 DHAGELAMDYGISAVPTVFAFKNGEKISGFSG 102
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 685 IASEYNINSMPTFVFXKNGKKLDEFSG 605
I+ + I + PT VF NGK++D G
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDG 91
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 685 IASEYNINSMPTFVFXKNGKKLDEFSG 605
I+ + I + PT VF NGK++D G
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDG 91
>Z99277-2|CAB16487.1| 557|Caenorhabditis elegans Hypothetical
protein Y53C12A.3 protein.
Length = 557
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -1
Query: 327 TVFLIWFFVYQGGAKEL*CMNCCFFFIFVRVTQMYNLTNTNQCVR*VSIVLLKTFVSNKY 148
T F W + GA + C F+ + + + T+QC +VLL T + +
Sbjct: 164 TCFGSWMLI--SGALWIACFLLAAEQPFLTILSSFGYSLTSQC-----LVLLLTSLFHSS 216
Query: 147 HNVFFFYVMQVEACFFNAVLMRL 79
H+ FF+V+ C +A+ M L
Sbjct: 217 HDHLFFFVLLASFCVPSALRMGL 239
>U97402-2|AAB63409.2| 393|Caenorhabditis elegans Hypothetical
protein C30H7.2a protein.
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGK 626
D+ DIA++Y++N PT +NG+
Sbjct: 79 DKNNDIATKYHVNKYPTLKLFRNGE 103
>U97402-1|ABB51193.1| 393|Caenorhabditis elegans Hypothetical
protein C30H7.2b protein.
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 700 DECEDIASEYNINSMPTFVFXKNGK 626
D+ DIA++Y++N PT +NG+
Sbjct: 79 DKNNDIATKYHVNKYPTLKLFRNGE 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,879
Number of Sequences: 27780
Number of extensions: 293179
Number of successful extensions: 619
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -