Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L21
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    29   0.99 
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    29   0.99 
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    27   4.0  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 413 RNIHGFQITRSTKCIPGVT 469
           RN  G +ITR  KC+PGVT
Sbjct: 113 RNFLGERITRVIKCLPGVT 131


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 413 RNIHGFQITRSTKCIPGVT 469
           RN  G +ITR  KC+PGVT
Sbjct: 113 RNFLGERITRVIKCLPGVT 131


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 396 IIKTNNETFMAFKLPDQQNAFLE*LRFSITNNDSLKHTNFK 518
           +I     TF+++ +P +    L   RF    +  LKH N K
Sbjct: 33  LITDRESTFLSYFVPSKDPKMLPVYRFMFQESADLKHCNHK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,539
Number of Sequences: 5004
Number of extensions: 59000
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)