Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L21
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.7  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 217 YLSKTLQCIILMDYYYLNIIPTCLW 143
           YLS  +   I MD YY  I P  LW
Sbjct: 123 YLSSFVLVCISMDRYYAVIKPLQLW 147


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 573 NYSSNTSTIFHILMQS 620
           NY SN +++FH L+Q+
Sbjct: 17  NYQSNMTSVFHQLLQT 32



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 60  LCFIEKKFVFQFIYETAI 7
           +CF + KF+ +F+Y   I
Sbjct: 81  VCFNDLKFIIEFVYRGEI 98


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 IFESNAFQNSHRHVGIIFK***SINIMHCNVLLK*FIIN 230
           I   + F N H H+  IFK   S N      +++ F+I+
Sbjct: 46  ILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLIS 84


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 114 IFESNAFQNSHRHVGIIFK***SINIMHCNVLLK*FIIN 230
           I   + F N H H+  IFK   S N      +++ F+I+
Sbjct: 29  ILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLIS 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,667
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)