Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L20
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   167   2e-42
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.0  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.6  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   4.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  167 bits (405), Expect = 2e-42
 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
 Frame = -2

Query: 563 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 390
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 389 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 210
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 209 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLD 108
           ++AILED+VFP EI+GKR R   DG + IKV LD
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLD 157



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 88  IEHXVDTFQSVYKKLTGREVTFEFP 14
           +++ + +F SVY KLTG+ VTFEFP
Sbjct: 164 VDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 441 FCNVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHRSNVIN 590
           FC+V +P++      GF    RL D+ + GI  ++  +    TH + +IN
Sbjct: 416 FCDVGVPEIS-----GFAHISRLSDKKVAGISPNSGPYKVDSTHEARIIN 460


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 271 LGLGRILRSPTKTTCLPLNFFSSSRTS 351
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 298  ETVRSCLSPATKPVLLTNKRGHAQ 227
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -2

Query: 401 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 309
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 243 KEATLKDIDLCVRCYPRGLGLPC 175
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 588  LLHWNDEYEDHQSERC*GGFLRDLDLAGA 502
            + +WND Y + ++ER    FL+DL++  A
Sbjct: 998  ICNWNDSYGEFETER--RYFLQDLEIEDA 1024


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,670
Number of Sequences: 5004
Number of extensions: 50568
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)