Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L19
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    31   1.0  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    29   4.1  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear recep...    27   9.4  

>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -3

Query: 459  QKLCKKLCTTLNVLFCKCAK--NACYSLVRKYLCSCKFLLYKFVKMTGFEV 313
            QK+CKK    +  +  KCAK    C   V+K    C   + K  K  G EV
Sbjct: 1286 QKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKKCAKNVQKMCKKYGLEV 1336


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = -3

Query: 591 ESSTEHPTVSTSHLNKY*LKILVIDVPIFICDYNKSYVRNVYVYQKLCKKLCTTLNVLFC 412
           +  TE P    S++N+    ++V   P+F+ +  ++++  V++Y    KK    +N L+ 
Sbjct: 146 DGMTEIPFTKPSYVNR---DVVVCVAPLFVSEQWQNFLFAVHIY----KKYGAFVN-LYL 197

Query: 411 KCAKNACYSLVRKY--LCSCKFLLY 343
             A N  Y+L+++Y    + KF+++
Sbjct: 198 ISAVNTFYNLMKEYEEAEAAKFIMF 222


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/74 (25%), Positives = 40/74 (54%)
 Frame = -3

Query: 591 ESSTEHPTVSTSHLNKY*LKILVIDVPIFICDYNKSYVRNVYVYQKLCKKLCTTLNVLFC 412
           +  TE P    S++N+    ++V   P+F+ +  ++++  V++Y    KK    +N L+ 
Sbjct: 134 DGRTEIPFTKPSYINR---DVVVCIAPLFVSEQWQNFLFAVHIY----KKYGAFVN-LYL 185

Query: 411 KCAKNACYSLVRKY 370
             A N  Y+L+++Y
Sbjct: 186 ISAVNTFYNLMKEY 199


>Z77132-4|CAB00862.3|  536|Caenorhabditis elegans Hypothetical
           protein F54D1.4 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 302 YLVVTSNPVIFTNLYNKNLQLHKYFLTKL*HAFFAHLQNKT 424
           Y+V+++   + +N  N++L L +  L++L      H +NKT
Sbjct: 287 YIVLSAESTVLSNSLNESLSLARENLSELLFKVIKHSRNKT 327


>AF083225-1|AAD03683.1|  536|Caenorhabditis elegans nuclear receptor
           NHR-7 protein.
          Length = 536

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 302 YLVVTSNPVIFTNLYNKNLQLHKYFLTKL*HAFFAHLQNKT 424
           Y+V+++   + +N  N++L L +  L++L      H +NKT
Sbjct: 287 YIVLSAESTVLSNSLNESLSLARENLSELLFKVIKHSRNKT 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,224
Number of Sequences: 27780
Number of extensions: 257602
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)