Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L19
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 351 LLYKFVKMTGFEVTTKYFYP 292
           L+Y F K + F +   +FYP
Sbjct: 336 LIYDFFKDSSFRIQHHFFYP 355


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 557 DVETVGCSVEDSGKSTTCS 613
           ++ T    V DSG S TCS
Sbjct: 4   EISTENAKVSDSGYSNTCS 22


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 557 DVETVGCSVEDSGKSTTCS 613
           ++ T    V DSG S TCS
Sbjct: 4   EISTENAKVSDSGYSNTCS 22


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 90   MIFFXLXHKLKNECE 46
            MI+F + HK KN+ E
Sbjct: 1491 MIYFVVEHKKKNQQE 1505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,045
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)