Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_L18
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 121 8e-29
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 87 2e-18
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 1.7
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 27 1.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 1.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 27 2.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.0
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 5.3
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 5.3
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 25 9.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 9.2
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 25 9.2
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 121 bits (292), Expect = 8e-29
Identities = 66/177 (37%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Frame = -1
Query: 608 IVWVXGGPGSGKGTQCDKIVAKYG-FTHLXXGDLLRAEV-KSGSERAKCLTAIMERGELV 435
+++V GGPG+GKGTQCD++ K+ F H+ GD LR E + GS+ + ++ G++V
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 434 PNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLX 258
P EI + LL+ + ++ FLIDG+PRE Q FE+++ P +YF ET+
Sbjct: 64 PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETML 123
Query: 257 QRLLGRAASSGRADDNEETIKLRLKTXLDNNDLV--XAQYPDKLRRINAERPVDEIF 93
+RL+ R +SGR+DDN E+IK R T + V + ++L I+AE+ D +F
Sbjct: 124 KRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVF 180
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 87.4 bits (207), Expect = 2e-18
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Frame = -1
Query: 593 GGPGSGKGTQCDKIVAKYGFTHLXXGDLLRAEVKSGSERAKCLTAIMERGELVPNEIVLD 414
G PG+GKGTQ I KYG HL GD+LR++V +E K IM++G LV ++IV
Sbjct: 10 GPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIVTG 69
Query: 413 LLKEAILARAEESKGFLIDGYPREKSQG----IAFEENIAPVSVIIYFEASSETLXQRLL 246
++K+ IL E GF++DG+PR Q +E ++ ++ + E L +R+
Sbjct: 70 MIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRIT 129
Query: 245 GRAASSG 225
GR G
Sbjct: 130 GRLVHPG 136
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 617 KKPIVWVXGGPGSGKGTQCDKIVAK 543
++ ++ + GGPGSGK T C I+AK
Sbjct: 28 QRVLIGLAGGPGSGKSTLC-AILAK 51
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 626 DTSKKPIVWVXGGPGSGKGTQCDKIVAK 543
D+ K I+ + GGP SGK C++++ +
Sbjct: 4 DSVKSAIIGIAGGPFSGKTQLCEQLLER 31
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 620 SKKPIVWVXGGPGSGKGTQCDKIVAKYGFT 531
SK I+ + G GSGK TQ + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.3
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = -2
Query: 568 HNATRSSPNTGSLTSXXETCSGLKSKAARRGRNALPLLWKE--ASLSLMKSSWIC*KKRS 395
++ T +SP + SLTS T S L S + A + AS S+ SS S
Sbjct: 97 NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156
Query: 394 WPVLKNPKASSSTATLARSHRVSLLKRTS 308
+ + S+++AT S S L T+
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTA 185
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 167 NDLVXAQYPDKLRRINAERPVDEIFVGGTVDPGPAGRVSRARE 39
+ +V Q+PDKL R + VD ++ V AG + E
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEE 238
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 164 DLVXAQYPDKLRRINAERPVDEIFVGGTVDPGPAGRVSRARESXLEPLTRN 12
D V + K + A P ++ TV PGP G+V+ + ++ T N
Sbjct: 1549 DTVLSSLGSKFSKFVAGDPNFDVMRPATVGPGPFGKVASQKNLTVQTNTNN 1599
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 176 LDNNDLVXAQYPDKLRRINAERPVDEI 96
++NN LV A DKL ++ ERP D I
Sbjct: 57 VENNILVMALTSDKLMIVDLERPEDII 83
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 517 ETCSGLKSKAARRGRNALPLLWKEASL 437
+ CS + S R GR +P+L K SL
Sbjct: 19 DCCSAVASALLRHGRLTIPMLQKRTSL 45
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -1
Query: 611 PIVWVXGGPGSGKGTQCDKIVAKYGFTHLXXGDLLR 504
P + + G PG+GK T +++ ++ GD+++
Sbjct: 9 PNIIICGTPGTGKTTLAEQVAETTELENICIGDVVK 44
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 329 IAFEENIAPVSVIIYFEASSETLXQRLLGRAASSGR 222
+A +EN+ P + EAS+ + + LL R +SGR
Sbjct: 1145 LANQENLVPAFFNKFREASTLKIQKALLTRLLNSGR 1180
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 404 EAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYF 282
EA + E + GF+ + P + G+ EEN P + IYF
Sbjct: 35 EATIPNLEVAFGFIDEVTP--VAYGVFIEENDQPAGMAIYF 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,793
Number of Sequences: 5004
Number of extensions: 39915
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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