Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L09
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   1.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   4.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   7.8  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 605 FSCNGYLQHQIYLFSAQSTKSYKSALI*NVLFTFTFQTMSFVLPRLTH 748
           +SCN YL  +    S+    SY+S+LI + L TF  +    ++  +TH
Sbjct: 102 YSCNPYLLFKGICASSCQIDSYQSSLIDDALETFGGRFSKGLMKSMTH 149


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 415 YDISVSQFCVCFAL*HDSQQFVSPLIKIIIFIVFLTCLRNFHYFSRFLTR 266
           YDI V       +       F S L K++IF+VFL+ + +  +  R L++
Sbjct: 585 YDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNSGPFIFRALSK 634


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 343 LIKIIIFIVFLT--CLRNFHYFSRFLTRHHWFYWLIV 239
           L  +++F +  T  CL  +H + +     +WF WL +
Sbjct: 195 LDSMLLFFIISTFFCLSRYHVYHKAPFTFYWFKWLFL 231


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 430 FHRKLYDISVSQFCVCFAL*HDSQQFVSPLIKIIIFIVFLTCLRNFHYFSRF 275
           + +  +DI +  F   F      +  V+P     IF   L CL ++ YFS F
Sbjct: 177 YGKNCFDIPIPTFGTLF-----KEHAVAPFFVFQIFCCVLWCLDDYWYFSLF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,372
Number of Sequences: 5004
Number of extensions: 68854
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)