Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L09
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    32   0.66 
02_05_0190 - 26592452-26592693,26592911-26593004,26593425-265936...    29   3.5  
06_01_0920 + 7098007-7098065,7098538-7099345                           29   4.7  
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427...    29   4.7  
03_01_0488 + 3706416-3707948                                           28   8.2  

>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 383 FRFVTRFATICISAY*NNYFYSIFNMFEKF-SLFFSIPHS-TSLVLLVNCSRAFWF 222
           F FV+    +CI  +  +  Y  F M E + +++ ++ HS  SLVL++ C  A WF
Sbjct: 251 FLFVSSSTLLCIYVFAMSALYIKFLMEEGYPTVWKALKHSPASLVLMIYCFIALWF 306


>02_05_0190 -
           26592452-26592693,26592911-26593004,26593425-26593656,
           26594660-26595066
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 311 NMFEKFSLFFSIPHSTSLVLLVNCSRAFWFEDWNNQTIE 195
           N+ + F L    P+   +V+ ++C RA W    NN+ ++
Sbjct: 198 NVLDAFRLLQKDPNVQKMVMSLSCDRAVWDAVMNNEAVQ 236


>06_01_0920 + 7098007-7098065,7098538-7099345
          Length = 288

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 558 EASNNNI-HVTINLLEHFRAMDTCNTKFIYFLLNLQRVIS 674
           E  N+++ H+ ++  E  +   TCN  +IY  LN  RV++
Sbjct: 94  ERRNSSVLHLPLHDSEFLQISQTCNCNYIYMTLNFIRVLA 133


>03_06_0609 -
           35042276-35042388,35042476-35042527,35042624-35042725,
           35043546-35043745,35045258-35045336,35045541-35045595,
           35045947-35046122,35046386-35046988,35047077-35047265,
           35048150-35048201,35048289-35048356,35048873-35048911,
           35048912-35048970,35049639-35049782,35050136-35050238,
           35050368-35050467,35050596-35050612
          Length = 716

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 424 RKLYDISVSQFCVCFAL*HDSQQFVSPLIKIIIFIVFLTCLRNFHYFSRFLTRHH 260
           +K+Y +      V  A      Q++SPL K II +   T     + FSRFL   H
Sbjct: 484 QKMYSVDFGPLNVLRAAAFHGAQYISPLKKNIISLQSSTSFARRYSFSRFLRVIH 538


>03_01_0488 + 3706416-3707948
          Length = 510

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 26  STLHLKSKQHSCPKTQSRHCHVFFFQLHGWLHR 124
           S LH ++ +H C    S H HV    LHG+  R
Sbjct: 142 SDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSR 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,626
Number of Sequences: 37544
Number of extensions: 369766
Number of successful extensions: 769
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)