Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L07
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   3.6  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.6  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   4.7  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.2  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 267 CKILNMQFFFFVSQTKIYTL*GSNV 193
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 395 HLGST--WRPKISKRSTTKHKNGL 330
           H GST  W    + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 267 CKILNMQFFFFVSQTKIYTL*GSNV 193
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 95  TCAREHRRDTPPTPAPHTR 39
           TCA+E R+ T P P  H R
Sbjct: 174 TCAKELRKKTVPCPVQHCR 192


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 197 LDP*SVYIFVWLTKKKNCIFS 259
           LDP   YIFV  T   NC+F+
Sbjct: 102 LDPSGHYIFVTTTAGDNCLFT 122


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 270  NCKILNMQFFFFVSQTKIYTL*GSNV 193
            NCK +  QFFF V  T  Y L   NV
Sbjct: 1092 NCKAIVYQFFFRVPYTDTYELNVYNV 1117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,935
Number of Sequences: 5004
Number of extensions: 39527
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)