Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L07
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0017 + 133311-133615,133698-133824,133912-134253                 32   0.40 
01_01_0134 - 1224084-1224269,1224578-1224662,1224763-1225050,122...    31   0.92 
02_05_0482 + 29382696-29383251,29383376-29383692                       29   2.8  
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    28   8.6  

>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 119 SASECVGCTCAREHRRDTPPTPAPHTRT 36
           S+S      C +   R+ PP PAPHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>01_01_0134 -
           1224084-1224269,1224578-1224662,1224763-1225050,
           1225114-1225334,1225511-1225642,1226218-1226494,
           1226722-1226770,1226993-1227088,1227779-1227911,
           1228241-1228391,1228484-1228674,1229167-1229382
          Length = 674

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 389 GSTWRPKISKRSTTKHKNGLYRFF 318
           GS + PK+ ++STTKH+ G +R F
Sbjct: 338 GSEFSPKLIQKSTTKHRRGWWRQF 361


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 377 ARSNLGGKVPKPSARAGRERWGAG 448
           +R  LG K P P  R G+ER G G
Sbjct: 39  SRKRLGAKPPSPQRRGGQEREGGG 62


>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
            27175673-27175753,27175838-27175894,27176103-27176202,
            27176280-27176350,27176427-27176567,27176657-27176863,
            27177442-27177612,27177735-27177815,27177887-27177940,
            27178040-27178154,27178302-27178441,27178976-27179197,
            27179278-27179376,27179461-27179580,27179776-27179981,
            27180072-27180249,27180426-27180486,27180587-27180696,
            27180765-27180896,27181124-27181165,27181592-27181762,
            27181806-27181808,27181848-27181974,27182130-27182164,
            27182982-27183083,27183167-27183224,27183314-27183415,
            27183513-27183659,27183744-27183880,27183973-27184122,
            27184234-27184393,27184930-27185075,27185162-27185305,
            27185535-27185663,27186376-27186420,27187103-27187192,
            27187473-27187475
          Length = 1506

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 720  ERRIKELTXQAEEDRKNHERMQDLVDKLQQK 628
            ERR +EL  + E   K  E++QD V +L++K
Sbjct: 994  ERRNEELIKKFEGAEKKIEQLQDTVQRLEEK 1024


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,244
Number of Sequences: 37544
Number of extensions: 298334
Number of successful extensions: 1136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)