Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L04
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   5.8  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    24   5.8  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 181 DFKRTSLNKFFTP-YHRYSYYNNIS-----I*VKLETLNPKXTXTDFAEDTLRFGFE 29
           DF+R   ++   P YH + YYN I+        K+    PK    DFA  TL  G++
Sbjct: 248 DFRRKLRSRDNRPNYHLFDYYNEIASSPNPSTTKITYNPPKLPMKDFA--TLPIGYQ 302


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 325 RKLVHPSKQKINKYT 281
           RK+ H +KQ++N+YT
Sbjct: 231 RKMGHEAKQQVNEYT 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,312
Number of Sequences: 5004
Number of extensions: 16074
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)