Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_L03
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.5  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    20   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   8.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = +1

Query: 127 GTGLCFVNYLAIITSITVNADRR 195
           G  +C V + + +  +T+N   R
Sbjct: 280 GVSICLVTFASALAVVTLNLHHR 302


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 292 TFVLCKMCD*Y*ISLHYDFH 233
           T VLC++C       HY  H
Sbjct: 5   TTVLCRVCGDKASGFHYGVH 24


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 292 TFVLCKMCD*Y*ISLHYDFH 233
           T VLC++C       HY  H
Sbjct: 63  TTVLCRVCGDKASGFHYGVH 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,457
Number of Sequences: 438
Number of extensions: 967
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)