Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_L02
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 107 2e-24
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 29 0.57
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 28 1.00
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 28 1.3
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 1.7
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 4.0
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 5.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.0
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 7.0
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.3
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.3
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 9.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 9.3
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 9.3
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 107 bits (256), Expect = 2e-24
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Frame = -3
Query: 587 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 408
HP +FF L+FR AI+ YIL +F+ SF+ F+++ LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47 HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106
Query: 407 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVW 288
N +G+S W+FE+ RN + + FW L L P +W
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIW 148
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 175 FGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGV 53
F + +S KSA+ F + I N FMF T ++ NT +
Sbjct: 334 FSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSFNTSL 374
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 28.3 bits (60), Expect = 1.00
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 122 DIPKRTCLYVLATHAAQRWQHWCRLNKIXR 33
D+P+ TCL +++H R Q RL +I R
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRILR 654
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -3
Query: 593 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 414
FV+P + F L CS ++ ++L G F F+A + I L + N S R
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411
Query: 413 RWW 405
+WW
Sbjct: 412 KWW 414
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -3
Query: 581 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 435
Y+ F LV +A++V G W S I V +L+L A +W KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 462 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYVXMDK 593
CR++ Y C++ G P Q NY H ++HY+ ++
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYICRER 306
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 536 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 369
V+I+ G+ F A L LL +F+ G L W +++ +NGK++W+
Sbjct: 30 VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 593 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 477
F+HP+ +FRC + + L + S SF SF+ +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 267 QNIKKSGPDQGAQRQAHPEQAALVPVDPALTGLEH 371
+N K P HP+Q + P DPA+ H
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRH 276
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 442 FLTVQKSADSSRMTNTKLAMNESENHPH 525
FLT+Q+ DS ++T+ L+++ + H H
Sbjct: 369 FLTLQEVFDSLKLTSYDLSIDTLDMHAH 396
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 599 KQFVHPYIVFFHLVFRCSAI 540
K+FV PY + + LVF S+I
Sbjct: 372 KEFVQPYFIIYTLVFFGSSI 391
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 207 PVRVKAI-NTRSIHLNLSPKRQNIKKSGPDQGAQRQAHPEQAALVPVDPALTGLEHP 374
P + AI N ++ L ++Q + GP Q Q+ + ++PA T + HP
Sbjct: 505 PEQATAIANALAVALAQKLQKQQTQMQGPQQVQQQAKRRKAYTSQQLNPAPTAMPHP 561
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 170 SELTLYVTVEISAC*SQGDQY*KHPLELESEK 265
SE+ V + IS S GD+ H L+++SEK
Sbjct: 1268 SEIADAVVLNISKLYSSGDKVRAHVLDVDSEK 1299
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 473 LLSADFWTVKNISGRLLVGLRWWNYV 396
L S W KN+ GR+L+ W+N V
Sbjct: 441 LNSLKSWIEKNMGGRILLTGSWYNGV 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,124
Number of Sequences: 5004
Number of extensions: 50742
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -