Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_L02
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-12|ABJ99069.1| 205|Caenorhabditis elegans Hypothetical p... 123 1e-28
U58755-11|AAB00701.1| 247|Caenorhabditis elegans Hypothetical p... 123 1e-28
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 29 2.8
U55364-3|AAN84821.1| 349|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 8.6
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U58755-12|ABJ99069.1| 205|Caenorhabditis elegans Hypothetical
protein C34D4.4b protein.
Length = 205
Score = 123 bits (296), Expect = 1e-28
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = -3
Query: 599 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 420
+ F P IV HL F+ +A+ Y +F++SFI F++++ LLS DFWTVKNI+GRLLV
Sbjct: 26 QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLV 85
Query: 419 GLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFYILPFRT 255
GLRWWN+VD +G +HW FE+ + +R + R+FW+GL + P W FF + F T
Sbjct: 86 GLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW-IFFVVTAFLT 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -1
Query: 283 LFFIFCLF-GLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS 149
+FF+ F LKF+WM++ L+ + ANL+GY++C++ E + S
Sbjct: 132 IFFVVTAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTS 177
>U58755-11|AAB00701.1| 247|Caenorhabditis elegans Hypothetical
protein C34D4.4a protein.
Length = 247
Score = 123 bits (296), Expect = 1e-28
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = -3
Query: 599 KQFVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLV 420
+ F P IV HL F+ +A+ Y +F++SFI F++++ LLS DFWTVKNI+GRLLV
Sbjct: 68 QMFGKPTIVLAHLSFKGAALFFYFFANFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLV 127
Query: 419 GLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFYILPFRT 255
GLRWWN+VD +G +HW FE+ + +R + R+FW+GL + P W FF + F T
Sbjct: 128 GLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAW-IFFVVTAFLT 183
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -1
Query: 283 LFFIFCLF-GLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS 149
+FF+ F LKF+WM++ L+ + ANL+GY++C++ E + S
Sbjct: 174 IFFVVTAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTS 219
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 415 SPTSNRPLIFLTVQKSADSSRMTNTKLAMNESENHPHRMYTIIAEHRNTRWKNTM 579
+P SN L ++ + M K+ +E++N+P R ++A N R NT+
Sbjct: 286 NPPSNASLKRRATEEFGNDGPMKQAKIEGSENDNNPMRKLEMMANSSNFRGGNTI 340
>U55364-3|AAN84821.1| 349|Caenorhabditis elegans Hypothetical
protein F21C10.12 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 113 KRTCLYVLATHAAQRWQHWCRLNKIXRGCIFKNDI 9
K LY++ +RW CR ++ C FKN +
Sbjct: 101 KTASLYIMVVITVERWIAVCRPLQVHIWCTFKNSV 135
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 480 HSTAVCRLLDCQEY*WSVTSWT*VVELCGRQRQVALGVRGPSEPGQQ 340
+S A C + C Y W+VT W+ + C R ++ V S G++
Sbjct: 1740 NSVANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 480 HSTAVCRLLDCQEY*WSVTSWT*VVELCGRQRQVALGVRGPSEPGQQ 340
+S A C + C Y W+VT W+ + C R ++ V S G++
Sbjct: 1740 NSVANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 280 FFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKC 179
FF+ L KF + A+ L G N+ G +KC
Sbjct: 334 FFVMALTRSKFIAQIAYTGAIVLAGVNMIGVVKC 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,766
Number of Sequences: 27780
Number of extensions: 300127
Number of successful extensions: 1126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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