Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K24
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    99   2e-23
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =   99 bits (238), Expect = 2e-23
 Identities = 50/122 (40%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
 Frame = -1

Query: 499 SVAAPQSPT----EPIPILKQESNIEPDGSYQYSYETGNGISAAERGALKNIGAEEPALE 332
           ++AAPQ P+    +   I  Q+  +  DG+Y  ++ET NGIS  E G  K +  E P + 
Sbjct: 12  TLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS 71

Query: 331 VEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPENN 152
            +G   Y + DG  + ++Y+A+ENGFQ QGSH+PT PPIP  IQRAL + A  P + +  
Sbjct: 72  -QGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDDGG 130

Query: 151 RP 146
           +P
Sbjct: 131 QP 132


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 538 MKTFVILFGLVAVSVAAP 485
           M+ F+IL  LVA+ V AP
Sbjct: 1   MRYFIILLALVALGVCAP 18


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 520 LFGLVAVSVAAPQSPTEPIPILKQESN 440
           +F LVA+S+    + T+PI   K ++N
Sbjct: 274 IFNLVAISIDRYIAVTQPIKYAKHKNN 300



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -3

Query: 635 ECKTTASTYLIRLTIGNLNEFGRPMAFT 552
           +C+   + +++   +G +N F  P+ +T
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVIYT 678


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 318 SSTQAKTVVLSSCPTSPTRMASSLRDLIYP 229
           +S+ A T+VLS CP++   +   + D   P
Sbjct: 845 ASSTAATLVLSGCPSNMMELQVDIADSQQP 874


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 271 ANENGFQPQGSHLPTPPPIPEVIQ 200
           AN N +QP    +P PP    V Q
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNVPQ 775


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,608
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)