Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K20
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   3.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   5.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   6.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   8.8  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    25   8.8  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   8.8  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 455 CNNHHSFDNTNFNKKHF--HTYCLQLVAISMYIMALWSRL 342
           C  H+  +N +  K      TYC  ++ +  Y + LW  L
Sbjct: 577 CTKHYVLENDSLYKNRVLPFTYCCSIMLVLAYAIGLWFTL 616


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -2

Query: 402 HLLSTACGYKYVYHGIMV*TRMW*QAILDCILLNY---LLFISLRWNYFITKFSYFNFYL 232
           HLL T   Y YV H   V   +W       +L N+   LLF  + W +F  + +    YL
Sbjct: 155 HLLVTDGIYAYVRHPSYVGFFIWALGT-QMLLGNFVSTLLFSLVLWKFFSQRITTEEAYL 213

Query: 231 INF 223
           ++F
Sbjct: 214 VSF 216


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 281 SDGITLLQNSLTLIFILSTXYVLTVLP*AGMLLST*LFVPMVESDFEIAC 132
           +DG+  LQN LT    LST  ++ +     +L    +  P  ++   I+C
Sbjct: 314 ADGLLSLQNDLTTPSSLSTSLLMEITKAIALLTQLKVPAPTFKTSVSISC 363


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 310 YTVKYGLLPHSSLDHNAMIYILIATSCRQ 396
           YT  Y  + +  L  + +IY L  TSC Q
Sbjct: 729 YTELYRFISNGHLHESGIIYCLSRTSCEQ 757


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 52  VYCCYNLFIDVIV 14
           VYCCYN+F  V V
Sbjct: 131 VYCCYNVFSQVDV 143


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 119 TNATYMQFQSHSQPWEQIIKLK 184
           + A+Y  F   S+PWEQ  +LK
Sbjct: 360 STASYGHFTDQSKPWEQPKELK 381


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 306 LNYLLFISLRWNYFITKFSYFNFY 235
           LN+ LF  LR  +   K S F+FY
Sbjct: 260 LNFPLFFQLRETFLDPKHSMFSFY 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,791
Number of Sequences: 5004
Number of extensions: 39085
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)