Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K19
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.3  

>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -2

Query: 558 DKYNMNKNLPML*LSFKTSKTTKILHI 478
           ++ NM++  P L LSFK S T+KI+HI
Sbjct: 88  EEENMDRK-PELQLSFKGSMTSKIIHI 113


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 249 KCFLLANLVLACNIIIKFLFIYLNL 175
           KCF L   +L C+ I+ FLF  ++L
Sbjct: 688 KCFYLEFEILYCSAIVLFLFSVMHL 712


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 121 VLNLKLCNIKIVVCKLNIRKDRLLS 47
           ++N+K+  + I++    +RKDRLLS
Sbjct: 544 IINVKVFKLGILIQNEKVRKDRLLS 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,333
Number of Sequences: 5004
Number of extensions: 43741
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)