Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K13
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.65 
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   1.1  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   1.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   3.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   6.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    24   6.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   6.1  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 174  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 260
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 115 QSHTLGQRTTCTPPESCSKVKKEXLTNM-HENHQLLIYV 2
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 315 LLSGCGIQENFNLFL-RIKVNKNINKMSAWRQAGLT 211
           LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 134 NVTXLTSESHLGPTDDLHTSRKLFQS 57
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 183 KVLRRSLKQEFRAEALKRDEXHVRVTPWANGRPAHL 76
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 343 RPMSLWIFHFTLWLWNSGKFQFIFENK 263
           +P+  W F  + +  +  +F FIFENK
Sbjct: 603 KPLESWDFKQSFFDKHKQEFGFIFENK 629


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 118 RQSHTLGQRTTCTPPESCSKVKK 50
           ++S     +T  TPP+ CS +KK
Sbjct: 39  KESLAASVKTPSTPPKECSHLKK 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,416
Number of Sequences: 5004
Number of extensions: 22990
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)