Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K11
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1179 - 35161229-35162368                                         30   1.5  
03_02_0836 - 11637618-11637962                                         30   2.0  

>01_06_1179 - 35161229-35162368
          Length = 379

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 201 KCPDWQLPPSRASPPRDKRYLKSDNSYKL 115
           KC D Q PP + SPPR  R      S KL
Sbjct: 95  KCSDTQFPPLQLSPPRKSRRRHRRRSVKL 123


>03_02_0836 - 11637618-11637962
          Length = 114

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 299 MGCVQSRYSNRKASSIGLNGRS-GAKAKLCPTLKSVQTGSY 180
           +GC++  +SN   SS G  GR+ G  A+ C    +   GS+
Sbjct: 32  LGCIRKSWSNDSLSSYGGGGRAGGGGAQACVCAPTTHPGSF 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,994,466
Number of Sequences: 37544
Number of extensions: 309111
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)