Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K05
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.81 
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    25   9.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.9  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.9  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -1

Query: 386 SSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 213
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S    T  +  S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 336 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 229
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 447 EIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGH 268
           ++G++ +    Q   + RI    R+ T   +LLHD+E   Y +++++  Q   +    G 
Sbjct: 159 QVGSIVEG--PQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQ 216

Query: 267 TSDLKR 250
              L++
Sbjct: 217 YKKLQQ 222


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -1

Query: 428  KPWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVAS 276
            K  +  S+  + ++S+T      ATSST+P S N++ RN+  +   RFV++
Sbjct: 3850 KTTSLNSNSYKWYNSTTQSVYYNATSSTVPWS-NSTFRNTSNTMTSRFVSN 3899


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 355 PPPRCRDHSIHRGGIRESASRYDS*PRGSHLGPQAVHNRE 236
           PP R R+ ++ R G R SA  +    R    GPQ   + E
Sbjct: 27  PPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRSLE 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,306
Number of Sequences: 5004
Number of extensions: 49086
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)