Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_K05
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.50 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 440 EPWPK-PWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSR 318
           EP PK PW +   + R   ++ GK+L  A  + +P S  T +
Sbjct: 203 EPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDK 244


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 657 HYLLSASYFNNYQTNREGFAKLFRKLSDDSWEK 559
           HYL + S   NY   +    + F K    SW K
Sbjct: 576 HYLDAKSSVQNYSLAKHQLKEAFVKAHLGSWVK 608


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 666 RSYHYLLSASYFNNYQTNREGFAKLF 589
           +S  + + +S  NNY  N   + KL+
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 666 RSYHYLLSASYFNNYQTNREGFAKLF 589
           +S  + + +S  NNY  N   + KL+
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 666 RSYHYLLSASYFNNYQTNREGFAKLF 589
           +S  + + +S  NNY  N   + KL+
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLY 100


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 271 TREATNRIGLLTHEFLLDVLSDLGIVEEVAVFSD 372
           + E+ N  GL    FL +V+SD   + +   F D
Sbjct: 802 SEESINNQGLECLRFLNEVISDFDAILDQNKFKD 835


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,126
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)