Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J22
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0493 - 25615507-25615524,25615564-25615816,25616127-256162...    29   1.9  
09_04_0541 + 18437075-18440062                                         28   3.4  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    27   4.5  
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973...    27   4.5  
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335           27   5.9  
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562...    27   5.9  
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472...    27   7.8  

>04_04_0493 -
           25615507-25615524,25615564-25615816,25616127-25616242,
           25616410-25616662,25616736-25616823,25616920-25616994,
           25617065-25617140,25617528-25617791
          Length = 380

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 47  PKVVAIGTSPSQFQLRR----SSHYHNRNILELCTLRFFLDPHRGPQV 178
           P     GTS S +Q RR    S+  HN+++ ELC  R   D  R  +V
Sbjct: 30  PPDFLFGTSSSAYQARRRNPHSTMLHNKSLSELCFFRLKADIWRVTKV 77


>09_04_0541 + 18437075-18440062
          Length = 995

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 272 VWSLHCKTELQCGAYCSSAPQIYSFYYTIES*LLLLQ 382
           +W    KT L CG +C  APQ       +ES LLL++
Sbjct: 745 LWGESLKTALLCGTHCFLAPQAKK--AEVESSLLLVK 779


>06_03_0912 +
           25896152-25896451,25896528-25897296,25897492-25897658,
           25898932-25901013,25901155-25901730,25904503-25905648,
           25907056-25908693
          Length = 2225

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 404 WINL*FKIGEVKAMIRLCNKMNRFGVLKSNTLRIATR 294
           W    FK+ E++AM+RLC K ++  ++ + + ++A R
Sbjct: 274 WEENNFKLDELEAMLRLCKKGSKV-IVTTRSKKVADR 309


>03_05_0787 +
           27696347-27696708,27696851-27696857,27697066-27697371,
           27697454-27697873
          Length = 364

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 218 VNGLSSAV-IHPASQPVGPGVD 156
           V+GL+S V  HPASQP  P VD
Sbjct: 253 VDGLTSFVPTHPASQPTNPIVD 274


>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
          Length = 377

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 312 RIALQHPKSIHFITQSNHS 368
           RI +QHP  IHF TQ + S
Sbjct: 335 RIPIQHPNQIHFSTQIHPS 353


>01_07_0341 -
           42855667-42855849,42855933-42855981,42856165-42856219,
           42856290-42856410,42856495-42856532,42856612-42856675,
           42856778-42856885,42857066-42857187,42857544-42857616,
           42857700-42857776,42858521-42858632
          Length = 333

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 253 KLGLSFCVEPSL*NRVAMRSVLLFSTPNLFI 345
           KLG +   +P L N V   ++L+F TP+ F+
Sbjct: 73  KLGANVIADPDLENAVKDANMLVFVTPHQFV 103


>06_03_0092 +
           16546204-16546693,16546958-16547028,16547145-16547221,
           16547322-16547469,16550080-16550148,16550348-16550509,
           16550625-16550785,16551240-16551324,16552068-16552144,
           16552234-16552441,16555844-16555921,16556463-16556591,
           16556665-16556808,16556893-16557038,16557137-16557293,
           16557391-16557449,16557582-16557741,16557849-16557998,
           16558093-16558229,16558325-16558471,16558556-16558657,
           16558742-16558799,16558895-16558996,16559729-16559766,
           16559868-16559994,16560075-16560245,16560334-16560465,
           16560577-16560686,16560866-16560926,16561031-16561208,
           16561293-16561498,16561590-16561709,16561903-16562001,
           16562152-16562370,16562701-16562840,16563175-16563286,
           16563375-16563425,16563509-16563589,16563683-16563853,
           16563934-16564089,16564174-16564380,16565145-16565215,
           16565315-16565414,16565783-16565839,16566156-16566212,
           16566308-16566388,16566467-16566606,16566641-16566764
          Length = 2041

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 264 FVLCGAFTVKPSCNAERIALQHPKSIHFITQSN 362
           ++LC A    P    E+  L +PK+ H++ QSN
Sbjct: 799 YLLCAA----PQEEVEKYKLGNPKTFHYLNQSN 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,329
Number of Sequences: 37544
Number of extensions: 216488
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)