Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_J22
(413 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical... 32 0.14
AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical ... 29 1.3
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 2.3
U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical pr... 28 3.1
AC024761-13|AAP13758.1| 353|Caenorhabditis elegans Peroxiredoxi... 28 3.1
AC024761-12|AAM97969.1| 387|Caenorhabditis elegans Peroxiredoxi... 28 3.1
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 5.4
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 26 9.4
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 26 9.4
L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy c... 26 9.4
L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated p... 26 9.4
AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical ... 26 9.4
AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy... 26 9.4
>AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical
protein Y69A2AR.3 protein.
Length = 83
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 137 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPSALK 39
YK EY +D S+ AEI M K R+ QPS K
Sbjct: 42 YKCDEYLKFDKYSYAHAEITMNKDRVVQPSYKK 74
>AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical
protein C03H5.6 protein.
Length = 530
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 50 KVVAIGTSPSQFQLRRSSHYHNRNILELCTLRFFLDPHR 166
K+V + + P F +RR+ ++ N +E RFF DP++
Sbjct: 395 KIVTMTSIPKAFNIRRTQNFDFENKIE--RFRFFSDPNK 431
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 ASQPVGPGVDPKKTG-AYKVPEYFCYD 108
A QP PG D + G YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 185 ASQPVGPGVDPKKTG-AYKVPEYFCYD 108
A QP PG D + G YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138
>U42848-2|AAA83608.2| 315|Caenorhabditis elegans Hypothetical
protein C31H1.5 protein.
Length = 315
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +1
Query: 316 LLFSTPNLFILLHNRIIAFTSPILNHRLIQF 408
+LF+ P L +LLH+ +IAF++P + HR +F
Sbjct: 1 MLFTLP-LLLLLHS-VIAFSTPEVQHRSKRF 29
>AC024761-13|AAP13758.1| 353|Caenorhabditis elegans Peroxiredoxin
protein 6, isoform c protein.
Length = 353
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 214 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNH 393
+TSG VE E K G C+ P +R L FS PN++ +L + + F I+
Sbjct: 177 ITSGTVEECTEELKEGNLLCIAPG-----GVREAL-FSDPNVYDILWGKRLGFAKVIIGS 230
Query: 394 R 396
+
Sbjct: 231 K 231
>AC024761-12|AAM97969.1| 387|Caenorhabditis elegans Peroxiredoxin
protein 6, isoform a protein.
Length = 387
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 214 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNH 393
+TSG VE E K G C+ P +R L FS PN++ +L + + F I+
Sbjct: 177 ITSGTVEECTEELKEGNLLCIAPG-----GVREAL-FSDPNVYDILWGKRLGFAKVIIGS 230
Query: 394 R 396
+
Sbjct: 231 K 231
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 119 FCYDNVSFFEAEIEMAKYRLPQPS 48
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 119 FCYDNVSFFEAEIEMAKYRLPQPS 48
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 206 SSAVIHPASQPVGPGVDPKKTGAYKVPEYFC 114
S +V QP PG DP+K A+K + C
Sbjct: 146 SESVDEDNEQPPEPGSDPRKIWAFKAAKMKC 176
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 160 WIQKKPERTKFQNISVMIM*ASSKLKLRWRSTDCHNL 50
++ + ++KFQ + + S LKLR R ++ H L
Sbjct: 1389 FVDRSRSKSKFQTNDIAVSLNSDDLKLRIRQSNAHTL 1425
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 232 RRFLKSMD*VAPSFIQLHNLWAPVWIQKKPERTKFQNISVM 110
R ++K++ V FIQ NLW P KK R+ F IS +
Sbjct: 67 RTYVKALTIVDEIFIQQLNLWCPK--SKKCFRSMFGEISAI 105
>L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy
chain protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 214 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 324
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
>L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated
protein 116 protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 214 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 324
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
>AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical
protein Y51B9A.4 protein.
Length = 334
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 80 QFQLRRSSHYHNRNILELCTL 142
+F+L + SHYH+R LC+L
Sbjct: 198 RFELIQQSHYHSRPQKSLCSL 218
>AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy
chain protein.
Length = 815
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 214 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLF 324
LT + E +GG + + C PS N +S LLF
Sbjct: 286 LTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLF 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,243
Number of Sequences: 27780
Number of extensions: 197862
Number of successful extensions: 460
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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