Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J19
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    28   1.5  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   3.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.5  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   4.6  
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po...    26   6.1  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   6.1  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 300 NIWLWNSPLFSVNFLNTKLN 241
           NIWL NSPL SV+ L   LN
Sbjct: 493 NIWLVNSPLSSVHQLREALN 512


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 614 DAFHNFHPQYQQYTQYSSVMRGHTESGKRGEEG 516
           D + N HP Y +Y+ Y      +     R E G
Sbjct: 305 DRYGNSHPSYNKYSHYQHGFNYNNSGNNRNESG 337


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 680 SLTMQSISSSLKETMNPKDIMTDAFHNFHPQYQQYT 573
           ++T++ I     E   P D +TDA  N+H   ++ T
Sbjct: 497 TVTLKKIKMLFSEASIPIDELTDALKNYHENLEEPT 532


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 464  ATNYHEKTTLLSSDDEFQ-*INEDKSHVKLETYRSPNSMKKFNFF 333
            A NY+ K TLL   DE     N+ ++  K    + PN   +++ F
Sbjct: 988  ALNYNNKATLLRMYDEVDFPKNQQRNKEKFRIQKRPNKKYRYHLF 1032


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 693 RPAPLPHHAVDLQQPQGDNESQGYNDGR-LPQLP 595
           RPAP  H A  ++  +G N+S+ ++D R +P  P
Sbjct: 488 RPAPSMHLADSIRSLRGLNDSKAFSDIRSMPATP 521


>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 145 QCLKGMLIKNKLFFVDLVFYFACKKPTK 228
           Q   G+L    L+ V +V Y AC +P K
Sbjct: 8   QRFNGLLEPTHLYIVSVVAYSACNRPDK 35


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +3

Query: 465 VADGSDALGRRARSQSRSFLSTLTGFRVTAHYGAVLGVLLVLRMEVVEGVRHYILGIHCL 644
           + D    +GR  R+ ++    T    +  +H G ++ VL   + ++ EG+  +   +   
Sbjct: 497 IEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPK 556

Query: 645 LEAAGDRL 668
           L A G R+
Sbjct: 557 LNAYGSRV 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,796
Number of Sequences: 5004
Number of extensions: 54210
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)