Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J19
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.93 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 565 LYWVYCWYCGWK 600
           L W+ C++C WK
Sbjct: 182 LVWILCYFCIWK 193


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +1

Query: 571 WVYCWYCGWK--LWKASVI 621
           W+ C++C WK   W   V+
Sbjct: 217 WIMCYFCIWKGVKWTGKVV 235


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +1

Query: 571 WVYCWYCGWK--LWKASVI 621
           W+ C++C WK   W   V+
Sbjct: 270 WIMCYFCIWKGVKWTGKVV 288


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 596 GSCGRRPSLYPWDSLSP 646
           GS G  PSLYP  + SP
Sbjct: 387 GSGGSFPSLYPMATTSP 403


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 109 KEKKNEQLIFIKQCLKGMLIKNKLFFV 189
           K+K  +  +   +C+KG+L+K+ L+ V
Sbjct: 598 KDKNKKVNVAGCRCVKGILLKSGLYHV 624


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 590 ADGSCGRRPSLY 625
           + G CGRRPS +
Sbjct: 43  SSGYCGRRPSTF 54


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 590 ADGSCGRRPSLY 625
           + G CGRRPS +
Sbjct: 43  SSGYCGRRPSTF 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,209
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)