Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J15
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
 Frame = +1

Query: 160 FS*TTSMYSFLMIFIT-KHILLTLLMLNLVSYIWQQLLNF*KKCT*NI*LQIIQMSML-N 333
           +S +  +Y +L+ F+  +   L L +++L  +   Q+L+  +  + N  L+ I+++   N
Sbjct: 112 WSQSVQLYDWLVTFLDDRQEELKLKLVSLCEFTSLQILSIIRLISSNY-LETIKLTFRKN 170

Query: 334 SQQ--NNFKWLLKTLTMHALRPVHTGGCLIPL 423
            +Q  +NF+ +LKT   +  +  +  GC  P+
Sbjct: 171 DEQLESNFQEILKTKQWNNAKAAYVKGCCTPI 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,710,872
Number of Sequences: 27780
Number of extensions: 312741
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)