Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J15
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.78 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.3  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 381 RAKARPYRWLPNTSN*SKLHNSRYSVALYFKRINRE 488
           R ++R  + + + SN + +HN+ Y+  LY+  IN E
Sbjct: 306 RERSREPKIISSLSN-NTIHNNNYNKKLYYNIINIE 340


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 TTSMYSFLMIFITKHILLTLLMLNLVSYIWQQ 264
           T + Y    + I+  ILL L + N +S  WQQ
Sbjct: 73  TATNYYLFSLAISDLILLVLGLPNELSLFWQQ 104


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -3

Query: 215 ICLVMKIIKNEYIDVVQENI**NHVQNRYLWMNCLFKEIRLPVLLVYFKS 66
           +C+++ ++ N  I  V  +   + +  R++  NCL   I L  ++V F++
Sbjct: 93  LCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -3

Query: 215 ICLVMKIIKNEYIDVVQENI**NHVQNRYLWMNCLFKEIRLPVLLVYFKS 66
           +C+++ ++ N  I  V  +   + +  R++  NCL   I L  ++V F++
Sbjct: 93  LCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -3

Query: 215 ICLVMKIIKNEYIDVVQENI**NHVQNRYLWMNCLFKEIRLPVLLVYFKS 66
           +C+++ ++ N  I  V  +   + +  R++  NCL   I L  ++V F++
Sbjct: 93  LCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRT 142


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +2

Query: 590 HHNVNVTAHPKISRYFSSYTNYCYP 664
           H N+     P I  +F+ Y   C P
Sbjct: 408 HSNLTTPDDPDIQIFFAGYQAICKP 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,836
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)